Dr. Yiming Cheng

Mathematician, Computational Biologist
Education

2003-2007

Ph.D Applied Mathematics, New Jersey Institute of Technology, USA

1999-2002

M.Sc. Computational Mathematics, Fudan University, China

1995-1999

B.Sc. Pure Mathematics, Fudan University, Shanghai, China

Publications

1. Y. Cheng, Z. Kang, W. Wang, “Minimal residual polynomial method on the asymmetric system”.
Journal of Fudan University (Natural Science), 42(2): 160-164, 2003.

2. Y. Cheng, R.M. Miura, B. Tian, “Prediction of mRNA polyadenylation sites by support vector machine”.
Bioinformatics 22(19): 2320-5, 2006.

3. Y. Cheng, D. Ghersi, C. Calcagno, LK. Selin, R. Puzone, F. Celada, “A discrete computer model of
the immune system reveals competitive interactions between the humoral and cellular branch and
between cross-reacting memory and naive responses”. Vaccine 27(6): 833-45, 2009.

4. Y. Pearson,  Y. Cheng, L. Selin, R. Puzone, F. Celada, “Systematic simulation of cross-reactivity predicts
ambuiguity in Tk memory: it may save lives of infected, but limits specificities vital for further responses”.
Autoimmunity 44(4): 1-13, 2011.

5. C. Calcagno, R. Puzone, Y.E. Peason,  Y. Cheng, S.K. Selin, D. Ghersi, F. Celada, “Computer simulations
of heterologous immunity: Highlights of interdisciplinary cooperation”. Autoimmunity 44(4):304-314, 2011.

6. Y. Cheng, F. Perocchi, "Prediction of mitochondrial protein function by comparative physiology and phylogenetic profiling". Methods Mol Biol 1264:321-9, 2015

7. Y. Cheng, F. Perocchi, "ProtPhylo: identification of protein-phenotype and protein-protein functional associations via phylogenetic profiling". Nucleic Acids Res, 2015

 

 

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